Something weird I noticed on that bypass issue:  it only does in on some of the bank presets.  IE, when I pull up preset 2:1, it stays active.  When I pull up preset 7:2, it pulls up the preset, then a quick "MUTE" message appears on the TF screen, and the pedal is bypassed.  When I switch back to 2:1, the pedal goes active, and the correct bank is pulled up.  There are no other MIDI messages being sent, makes me think it's a programming issue on the pedal.